In an extraordinary on-air rebuke, one of the top journalists at “60 Minutes” directly criticized the program’s parent company in the final moments of its Sunday night CBS telecast, its first episode since the program’s executive producer, Bill Owens, announced his intention to resign.

“Paramount began to supervise our content in new ways,” the correspondent, Scott Pelley, told viewers. “None of our stories has been blocked, but Bill felt he lost the independence that honest journalism requires.”

A spokesman for Paramount had no immediate comment, and has previously declined to comment on Mr. Owens’s departure.

Mr. Owens stunned the show’s staff on Tuesday when he said he would leave the highest-rated program in television news over disagreements with Paramount, CBS’s corporate parent, saying, “It’s clear the company is done with me.”

Mr. Owens’s comments were widely reported in the press last week. The show’s decision to repeat those grievances on-air may have exposed viewers to the serious tensions between “60 Minutes” and its corporate overseers for the first time.

Shari Redstone, the controlling shareholder of Paramount, has been intent on securing approval from the Trump administration for a multibillion-dollar sale of her media company to a studio run by the son of Larry Ellison, the tech billionaire.